Top Researches Members What's New Publications Calendar Comp Bio in Ochanomizu Life Science Program in Grad. School Advanced Science Program in Grad. School Faculty of Science Center for Informational Biology Ochanomizu University

2013

• Masui,R., Takahata, Y., Inoue, M., Iio, Y., Okanishi, H., Kim, K., Nakagawa, N., Yura, K., Kuramitsu, S. (2013) Structural insights of post-translational modification sites in the proteome of Thermus thermophilus. Journal of Structural and Functional Genomics, in press./li>
• Terui, H., Tachikawa, T., Kakuta, M., Nishimura, Y., Yatsuoka, T., Yamaguchi, K., Yura, K., Akagi, K. T (2013) Molecular and clinical characteristics of MSH6 germline variants detected in colorectal cancer patients. Oncology Reports, in press.
• Hoshina, S., Yura, K., Teranishi, H., Kiyasu, N., Tominaga, A., Kadoma, H., Nakatsuka, A., Kunichika, T., Obuse, C., Waga, S. (2013) Human Origin Recognition Complex Binds Preferentially to G-Quadruplex-Preferable RNA and Single-Stranded DNA. Journal of Biological Chemistry, in press.
• Terui, H., Akagi, K., Kawame, H., Yura, K. (2013) CoDP: predicting the impact of unclassified genetic variants in MSH6 by the combination of different properties of the protein. Journal of Biomedical Science, 20, 25.
• Takai, T., Higaki, K., Aguilar-Moncayo, M., Mena-Barragan, T., Hirano, Y., Yura, K., Yu, L., Ninomiya, Garcia-Moreno, H.M.I., Sakakibara, Y., Ohno, K., Nanba, E., Mellet, C.O., Fernandez, J.M.G., Suzuki, Y. (2013) A bicyclic 1-deoxygalactonojirimycin derivative as a novel pharmacological chaperone for GM1 gangliosidosis. Molecular Therapy, 21(3), 526-532.
• Kobayashi, E., Yura, K., Nagai, Y. (2013) Distinct Conformation of ATP Molecule in Solution and on Protein. BIOPHYSICS, 9, 1-12.

2012

• Aguilar-Moncayo, M., Takai, T., Higaki, K., Mena-Barragan T., Hirano, Y., Yura, K., Li, L., Yu, Y., Ninomiya, H., Garcia-Moreno, M.I., Ishii, S., Sakakibara, Y., Ohno, K., Nanba, E., Oritz Mellet, C., Garcai Fernandez, J.M., Suzuki, Y. (2012) Tuning glycosidase inhibition through aglycone interactions: pharmacological chaperones for Fabry disease and GM1 gangliosidosis. Chem. Commun., 48, 6514-6516.

2011

• Atsushi Hijikata, A., Kei Yura, Tosiyuki Noguti, Mitiko Go (2011) Revisiting gap locations in amino acid sequence alignments and a proposal for a method to improve them by introducing solvent accessibility. Proteins: Structure, Function, and Bioinformatics,79(6), 1868-1877.

2009

• Kei Yura, Steven Hayward (2009) The interwinding nature of protein-protein interfaces and its implication for protein complex formation. Bioinformatics, 25(23), 3108-3113.
• Kei Yura, Sintawee Sulaiman, Yosuke Hatta, Masafumi Shionyu Mitiko Go (2009) RESOPS: a database for analyzing the correspondence of RNA editing sites to protein three-dimensional structures. Plant and Cell Physiology, 50(11), 1865-1873.
• Kengo Kinoshita, Hidetoshi Kono, Kei Yura (2009) Prediction of molecular interactions from 3D-structures: from small ligands to large protein complexes, in Prediction of Protein Structures, Functions, and Interactions (ed. Bujnicki, J.M.), Wiley and Sons, pp 159-186.

2008

• Kei Yura (2008) Prediction of Protein-RNA, Protein-Protein and Protein-Ligand Interfaces Based on Protein Sequences and 3D-Structures, in the Proceedings of International Symposium on Frontiers of Computational Science 2008 (eds. Yukio Kaneda, Masaki Sasai, Kanta Tachibana), pp.77-86.
• Kei Yura, Mitiko Go (2008) Correlation between amino acid residues converted by RNA editing and functional residues in protein three-dimensional structures in plant organelles. BMC Plant Biology, 8, 79.
• Kei Yura, Yuki Miyata, Tomotsugu Arikawa, Masanobu Higuchi, Mamoru Sugita (2008) Characteristics and prediction of RNA editing sites in transcripts of the moss Takakia lepidozioides chloroplast. DNA Research, 15 (5), 309-321. (Google Scholar Citation)
• Atsushi Matsumoto, Tetsuji Kamata, Junichi Takagi, Kenji Iwasaki, Kei Yura (2008) Key interactions in integrin ectodomain responsible for global conformational change detected by elastic network normal mode analysis. Biophysical Journal, 95 (6), 2895-2908. (Google Scholar Citation)
• Yuji Miyazawa, Hirotaka Nishioka, Kei Yura, Takahisa Yamato (2008) Discrimination of class I cyclobutane pyrimidine dimer photolyase from blue light photoreceptors by single methionine residue. Biophysical Journal, 94, 2194-2203.
• Genome Information Integration Project and H-Invitational 2 consortium (Kei Yura is the 75th / 136 authors) (2008) The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Nucleic Acids Research, 36, D793-D799. (Google Scholar Citation)
• Hidetoshi Kono, Tomo Yuasa, Shinya Nishiue, Kei Yura (2008) coliSNP database server mapping nsSNPs on protein structures. Nucleic Acids Research, 36, D409-D413. (Google Scholar Citation)