# Makefile.in generated by automake 1.10.1 from Makefile.am. # emboss/acd/Makefile. Generated from Makefile.in by configure. # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, # 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc. # This Makefile.in is free software; the Free Software Foundation # gives unlimited permission to copy and/or distribute it, # with or without modifications, as long as this notice is preserved. # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY, to the extent permitted by law; without # even the implied warranty of MERCHANTABILITY or FITNESS FOR A # PARTICULAR PURPOSE. pkglibdir = $(libdir)/EMBOSS pkgincludedir = $(includedir)/EMBOSS am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd install_sh_DATA = $(install_sh) -c -m 644 install_sh_PROGRAM = $(install_sh) -c install_sh_SCRIPT = $(install_sh) -c INSTALL_HEADER = $(INSTALL_DATA) transform = $(program_transform_name) NORMAL_INSTALL = : PRE_INSTALL = : POST_INSTALL = : NORMAL_UNINSTALL = : PRE_UNINSTALL = : POST_UNINSTALL = : build_triplet = x86_64-unknown-linux-gnu host_triplet = x86_64-unknown-linux-gnu subdir = emboss/acd DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/grout.m4 \ $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/sgi.m4 \ $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs CONFIG_CLEAN_FILES = SOURCES = DIST_SOURCES = am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; am__vpath_adj = case $$p in \ $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \ *) f=$$p;; \ esac; am__strip_dir = `echo $$p | sed -e 's|^.*/||'`; am__installdirs = "$(DESTDIR)$(pkgdatadir)" "$(DESTDIR)$(pkgdata2dir)" \ "$(DESTDIR)$(pkgdata3dir)" pkgdataDATA_INSTALL = $(INSTALL_DATA) pkgdata2DATA_INSTALL = $(INSTALL_DATA) pkgdata3DATA_INSTALL = $(INSTALL_DATA) DATA = $(pkgdata_DATA) $(pkgdata2_DATA) $(pkgdata3_DATA) DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) pkgdatadir = $(prefix)/share/$(PACKAGE)/acd ACLOCAL = ${SHELL} /m3/emboss/emboss/missing --run aclocal-1.10 AJAX_FIXED_ROOT = \"/m3/emboss/emboss/emboss\" AMTAR = ${SHELL} /m3/emboss/emboss/missing --run tar AR = ar AUTOCONF = ${SHELL} /m3/emboss/emboss/missing --run autoconf AUTOHEADER = ${SHELL} /m3/emboss/emboss/missing --run autoheader AUTOMAKE = ${SHELL} /m3/emboss/emboss/missing --run automake-1.10 AWK = gawk CC = gcc CCDEPMODE = depmode=gcc3 CFLAGS = -O2 -D__amd64__ CPP = gcc -E CPPFLAGS = -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH CXX = g++ CXXCPP = g++ -E CXXDEPMODE = depmode=gcc3 CXXFLAGS = -g -O2 CYGPATH_W = echo DEFS = -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"EMBOSS\" -DVERSION=\"6.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1 -DPLD_png=1 DEPDIR = .deps ECHO = echo ECHO_C = ECHO_N = -n ECHO_T = EGREP = /bin/grep -E EMBOSS_TOP = /m3/emboss/emboss EXEEXT = F77 = gfortran FFLAGS = -g -O2 GREP = /bin/grep HAVE_MEMMOVE = HAVE_STRERROR = INSTALL = /usr/bin/install -c INSTALL_DATA = ${INSTALL} -m 644 INSTALL_PROGRAM = ${INSTALL} INSTALL_SCRIPT = ${INSTALL} INSTALL_STRIP_PROGRAM = $(install_sh) -c -s ISAIXIA64 = ISCYGWIN = JAVA_OK = LDFLAGS = LIBOBJS = LIBS = -lm -lgd -lpng -lz -lm LIBTOOL = $(SHELL) $(top_builddir)/libtool LN_S = ln -s LTLIBOBJS = MAKEINFO = ${SHELL} /m3/emboss/emboss/missing --run makeinfo MKDIR_P = /bin/mkdir -p NEEDAJAX = OBJEXT = o PACKAGE = EMBOSS PACKAGE_BUGREPORT = PACKAGE_NAME = PACKAGE_STRING = PACKAGE_TARNAME = PACKAGE_VERSION = PATH_SEPARATOR = : PCRE_DATE = 21-May-2003 PCRE_LIB_VERSION = 0:1:0 PCRE_MAJOR = 4 PCRE_MINOR = 3 PCRE_POSIXLIB_VERSION = 0:0:0 PCRE_VERSION = 4.3 POSIX_MALLOC_THRESHOLD = -DPOSIX_MALLOC_THRESHOLD=10 RANLIB = ranlib SED = /bin/sed SET_MAKE = SHELL = /bin/sh STRIP = strip VERSION = 6.0.1 XLIB = -L/usr/lib64 -lX11 XMKMF = X_CFLAGS = X_EXTRA_LIBS = X_LIBS = -L/usr/lib64 X_PRE_LIBS = -lSM -lICE abs_builddir = /m3/emboss/emboss/emboss/acd abs_srcdir = /m3/emboss/emboss/emboss/acd abs_top_builddir = /m3/emboss/emboss abs_top_srcdir = /m3/emboss/emboss ac_ct_CC = gcc ac_ct_CXX = g++ ac_ct_F77 = gfortran am__include = include am__leading_dot = . am__quote = am__tar = ${AMTAR} chof - "$$tardir" am__untar = ${AMTAR} xf - bindir = ${exec_prefix}/bin build = x86_64-unknown-linux-gnu build_alias = build_cpu = x86_64 build_os = linux-gnu build_vendor = unknown builddir = . datadir = ${datarootdir} datarootdir = ${prefix}/share docdir = ${datarootdir}/doc/${PACKAGE} dvidir = ${docdir} exec_prefix = ${prefix} havejavac = host = x86_64-unknown-linux-gnu host_alias = host_cpu = x86_64 host_os = linux-gnu host_vendor = unknown htmldir = ${docdir} includedir = ${prefix}/include infodir = ${datarootdir}/info install_sh = $(SHELL) /m3/emboss/emboss/install-sh libdir = ${exec_prefix}/lib libexecdir = ${exec_prefix}/libexec localedir = ${datarootdir}/locale localstatedir = ${prefix}/var mandir = ${datarootdir}/man mkdir_p = /bin/mkdir -p oldincludedir = /usr/include pdfdir = ${docdir} prefix = /usr/local program_transform_name = s,x,x, psdir = ${docdir} sbindir = ${exec_prefix}/sbin sharedstatedir = ${prefix}/com srcdir = . sysconfdir = ${prefix}/etc target_alias = top_builddir = ../.. top_srcdir = ../.. pkgdata_DATA = aaindexextract.acd abiview.acd acdc.acd acdlog.acd \ acdpretty.acd acdtable.acd acdtrace.acd acdvalid.acd ajbad.acd \ ajfeatest.acd ajtest.acd aligncopy.acd aligncopypair.acd antigenic.acd \ backtranambig.acd backtranseq.acd banana.acd \ biosed.acd btwisted.acd cai.acd chaos.acd charge.acd checktrans.acd \ chips.acd cirdna.acd codcmp.acd codcopy.acd coderet.acd complex.acd \ compseq.acd cons.acd consambig.acd \ corbatest.acd cpgplot.acd cpgreport.acd \ cusp.acd cutgextract.acd cutseq.acd dan.acd dbiblast.acd \ dbifasta.acd dbiflat.acd dbigcg.acd dbxfasta.acd dbxflat.acd \ dbxgcg.acd dbxstat.acd degapseq.acd density.acd descseq.acd \ diffseq.acd digest.acd \ distmat.acd dotmatcher.acd dotpath.acd dottup.acd dreg.acd \ edialign.acd \ einverted.acd embossdata.acd embossversion.acd emma.acd emowse.acd \ entrails.acd entret.acd epestfind.acd eprimer3.acd equicktandem.acd \ est2genome.acd etandem.acd \ extractalign.acd extractfeat.acd extractseq.acd \ featcopy.acd featreport.acd findkm.acd freak.acd \ fuzznuc.acd fuzzpro.acd fuzztran.acd \ garnier.acd geecee.acd getorf.acd giep.acd \ helixturnhelix.acd histogramtest.acd \ hmoment.acd iep.acd infoalign.acd infoseq.acd intconv.acd \ isochore.acd jaspextract.acd jaspscan.acd lindna.acd listor.acd \ makenucseq.acd makeprotseq.acd marscan.acd \ maskambignuc.acd maskambigprot.acd maskfeat.acd maskseq.acd \ matcher.acd megamerger.acd \ merger.acd msbar.acd mwcontam.acd mwfilter.acd pkgdata2_DATA = needle.acd newcoils.acd newcpgreport.acd newcpgseek.acd \ newseq.acd nohtml.acd noreturn.acd nospace.acd notab.acd \ notseq.acd nthseq.acd \ octanol.acd oddcomp.acd origsplitter.acd origunion.acd \ palindrome.acd pasteseq.acd patmatdb.acd patmatmotifs.acd \ patmattest.acd pepcoil.acd pepinfo.acd pepnet.acd pepstats.acd \ pepwheel.acd pepwindow.acd pepwindowall.acd plotcon.acd plotorf.acd \ polydot.acd preg.acd prettyplot.acd prettyseq.acd prima.acd \ primers.acd primersearch.acd printsextract.acd profit.acd \ prophecy.acd prophet.acd prosextract.acd pscan.acd psiphi.acd \ rebaseextract.acd recoder.acd redata.acd remap.acd restover.acd \ restrict.acd revseq.acd seealso.acd seqinfo.acd seqmatchall.acd \ seqret.acd seqretall.acd seqretallfeat.acd seqretset.acd \ seqretsingle.acd seqretsplit.acd seqrettype.acd showalign.acd \ showdb.acd showfeat.acd showorf.acd showseq.acd shuffleseq.acd \ sigcleave.acd silent.acd sirna.acd \ sixpack.acd sizeseq.acd skipredundant.acd skipseq.acd \ splitter.acd stretcher.acd stssearch.acd supermatcher.acd syco.acd \ tcode.acd testplot.acd textsearch.acd tfextract.acd tfm.acd \ tfscan.acd tmap.acd tranalign.acd transeq.acd treetypedisplay.acd \ trimest.acd trimseq.acd twofeat.acd union.acd vectorstrip.acd \ water.acd whichdb.acd wobble.acd \ wordcount.acd wordfinder.acd wordmatch.acd \ wossname.acd yank.acd pkgdata3_DATA = codes.english \ groups.standard keywords.standard knowntypes.standard \ sections.standard variables.standard pkgdata2dir = $(prefix)/share/$(PACKAGE)/acd pkgdata3dir = $(prefix)/share/$(PACKAGE)/acd all: all-am .SUFFIXES: $(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(am__configure_deps) @for dep in $?; do \ case '$(am__configure_deps)' in \ *$$dep*) \ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh \ && exit 0; \ exit 1;; \ esac; \ done; \ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/acd/Makefile'; \ cd $(top_srcdir) && \ $(AUTOMAKE) --gnu emboss/acd/Makefile .PRECIOUS: Makefile Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status @case '$?' in \ *config.status*) \ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \ *) \ echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \ esac; $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(top_srcdir)/configure: $(am__configure_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh $(ACLOCAL_M4): $(am__aclocal_m4_deps) cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh mostlyclean-libtool: -rm -f *.lo clean-libtool: -rm -rf .libs _libs install-pkgdataDATA: $(pkgdata_DATA) @$(NORMAL_INSTALL) test -z "$(pkgdatadir)" || $(MKDIR_P) "$(DESTDIR)$(pkgdatadir)" @list='$(pkgdata_DATA)'; for p in $$list; do \ if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ f=$(am__strip_dir) \ echo " $(pkgdataDATA_INSTALL) '$$d$$p' '$(DESTDIR)$(pkgdatadir)/$$f'"; \ $(pkgdataDATA_INSTALL) "$$d$$p" "$(DESTDIR)$(pkgdatadir)/$$f"; \ done uninstall-pkgdataDATA: @$(NORMAL_UNINSTALL) @list='$(pkgdata_DATA)'; for p in $$list; do \ f=$(am__strip_dir) \ echo " rm -f '$(DESTDIR)$(pkgdatadir)/$$f'"; \ rm -f "$(DESTDIR)$(pkgdatadir)/$$f"; \ done install-pkgdata2DATA: $(pkgdata2_DATA) @$(NORMAL_INSTALL) test -z "$(pkgdata2dir)" || $(MKDIR_P) "$(DESTDIR)$(pkgdata2dir)" @list='$(pkgdata2_DATA)'; for p in $$list; do \ if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ f=$(am__strip_dir) \ echo " $(pkgdata2DATA_INSTALL) '$$d$$p' '$(DESTDIR)$(pkgdata2dir)/$$f'"; \ $(pkgdata2DATA_INSTALL) "$$d$$p" "$(DESTDIR)$(pkgdata2dir)/$$f"; \ done uninstall-pkgdata2DATA: @$(NORMAL_UNINSTALL) @list='$(pkgdata2_DATA)'; for p in $$list; do \ f=$(am__strip_dir) \ echo " rm -f '$(DESTDIR)$(pkgdata2dir)/$$f'"; \ rm -f "$(DESTDIR)$(pkgdata2dir)/$$f"; \ done install-pkgdata3DATA: $(pkgdata3_DATA) @$(NORMAL_INSTALL) test -z "$(pkgdata3dir)" || $(MKDIR_P) "$(DESTDIR)$(pkgdata3dir)" @list='$(pkgdata3_DATA)'; for p in $$list; do \ if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \ f=$(am__strip_dir) \ echo " $(pkgdata3DATA_INSTALL) '$$d$$p' '$(DESTDIR)$(pkgdata3dir)/$$f'"; \ $(pkgdata3DATA_INSTALL) "$$d$$p" "$(DESTDIR)$(pkgdata3dir)/$$f"; \ done uninstall-pkgdata3DATA: @$(NORMAL_UNINSTALL) @list='$(pkgdata3_DATA)'; for p in $$list; do \ f=$(am__strip_dir) \ echo " rm -f '$(DESTDIR)$(pkgdata3dir)/$$f'"; \ rm -f "$(DESTDIR)$(pkgdata3dir)/$$f"; \ done tags: TAGS TAGS: ctags: CTAGS CTAGS: distdir: $(DISTFILES) @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \ list='$(DISTFILES)'; \ dist_files=`for file in $$list; do echo $$file; done | \ sed -e "s|^$$srcdirstrip/||;t" \ -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \ case $$dist_files in \ */*) $(MKDIR_P) `echo "$$dist_files" | \ sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \ sort -u` ;; \ esac; \ for file in $$dist_files; do \ if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \ if test -d $$d/$$file; then \ dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \ cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \ fi; \ cp -pR $$d/$$file $(distdir)$$dir || exit 1; \ else \ test -f $(distdir)/$$file \ || cp -p $$d/$$file $(distdir)/$$file \ || exit 1; \ fi; \ done check-am: all-am check: check-am all-am: Makefile $(DATA) installdirs: for dir in "$(DESTDIR)$(pkgdatadir)" "$(DESTDIR)$(pkgdata2dir)" "$(DESTDIR)$(pkgdata3dir)"; do \ test -z "$$dir" || $(MKDIR_P) "$$dir"; \ done install: install-am install-exec: install-exec-am install-data: install-data-am uninstall: uninstall-am install-am: all-am @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am installcheck: installcheck-am install-strip: $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \ install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \ `test -z '$(STRIP)' || \ echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install mostlyclean-generic: clean-generic: distclean-generic: -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES) maintainer-clean-generic: @echo "This command is intended for maintainers to use" @echo "it deletes files that may require special tools to rebuild." clean: clean-am clean-am: clean-generic clean-libtool mostlyclean-am distclean: distclean-am -rm -f Makefile distclean-am: clean-am distclean-generic dvi: dvi-am dvi-am: html: html-am info: info-am info-am: install-data-am: install-pkgdata2DATA install-pkgdata3DATA \ install-pkgdataDATA install-dvi: install-dvi-am install-exec-am: install-html: install-html-am install-info: install-info-am install-man: install-pdf: install-pdf-am install-ps: install-ps-am installcheck-am: maintainer-clean: maintainer-clean-am -rm -f Makefile maintainer-clean-am: distclean-am maintainer-clean-generic mostlyclean: mostlyclean-am mostlyclean-am: mostlyclean-generic mostlyclean-libtool pdf: pdf-am pdf-am: ps: ps-am ps-am: uninstall-am: uninstall-pkgdata2DATA uninstall-pkgdata3DATA \ uninstall-pkgdataDATA .MAKE: install-am install-strip .PHONY: all all-am check check-am clean clean-generic clean-libtool \ distclean distclean-generic distclean-libtool distdir dvi \ dvi-am html html-am info info-am install install-am \ install-data install-data-am install-dvi install-dvi-am \ install-exec install-exec-am install-html install-html-am \ install-info install-info-am install-man install-pdf \ install-pdf-am install-pkgdata2DATA install-pkgdata3DATA \ install-pkgdataDATA install-ps install-ps-am install-strip \ installcheck installcheck-am installdirs maintainer-clean \ maintainer-clean-generic mostlyclean mostlyclean-generic \ mostlyclean-libtool pdf pdf-am ps ps-am uninstall uninstall-am \ uninstall-pkgdata2DATA uninstall-pkgdata3DATA \ uninstall-pkgdataDATA # Tell versions [3.59,3.63) of GNU make to not export all variables. # Otherwise a system limit (for SysV at least) may be exceeded. .NOEXPORT: