# Makefile.in generated by automake 1.10.1 from Makefile.am.
# @configure_input@

# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.

# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.

@SET_MAKE@


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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@dbxgcg_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@dbxstat_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@degapseq_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@density_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@descseq_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@diffseq_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@distmat_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@dotmatcher_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@dotpath_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@dreg_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@epestfind_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@eprimer3_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@extractseq_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@featcopy_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@featreport_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@findkm_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@fuzznuc_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@fuzzpro_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@fuzzpro_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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fuzztran_OBJECTS = $(am_fuzztran_OBJECTS)
fuzztran_LDADD = $(LDADD)
@ISCYGWIN_FALSE@fuzztran_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@fuzztran_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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garnier_OBJECTS = $(am_garnier_OBJECTS)
garnier_LDADD = $(LDADD)
@ISCYGWIN_FALSE@garnier_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@garnier_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_geecee_OBJECTS = geecee.$(OBJEXT)
geecee_OBJECTS = $(am_geecee_OBJECTS)
geecee_LDADD = $(LDADD)
@ISCYGWIN_FALSE@geecee_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@geecee_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_getorf_OBJECTS = getorf.$(OBJEXT)
getorf_OBJECTS = $(am_getorf_OBJECTS)
getorf_LDADD = $(LDADD)
@ISCYGWIN_FALSE@getorf_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@getorf_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
giep_SOURCES = giep.c
giep_OBJECTS = giep.$(OBJEXT)
giep_LDADD = $(LDADD)
@ISCYGWIN_FALSE@giep_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@giep_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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helixturnhelix_LDADD = $(LDADD)
@ISCYGWIN_FALSE@helixturnhelix_DEPENDENCIES =  \
@ISCYGWIN_FALSE@	../nucleus/libnucleus.la ../ajax/libajaxg.la \
@ISCYGWIN_FALSE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_FALSE@	$(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@helixturnhelix_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_histogramtest_OBJECTS = histogramtest.$(OBJEXT)
histogramtest_OBJECTS = $(am_histogramtest_OBJECTS)
histogramtest_LDADD = $(LDADD)
@ISCYGWIN_FALSE@histogramtest_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@histogramtest_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_hmoment_OBJECTS = hmoment.$(OBJEXT)
hmoment_OBJECTS = $(am_hmoment_OBJECTS)
hmoment_LDADD = $(LDADD)
@ISCYGWIN_FALSE@hmoment_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@hmoment_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_iep_OBJECTS = iep.$(OBJEXT)
iep_OBJECTS = $(am_iep_OBJECTS)
iep_LDADD = $(LDADD)
@ISCYGWIN_FALSE@iep_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@iep_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_infoalign_OBJECTS = infoalign.$(OBJEXT)
infoalign_OBJECTS = $(am_infoalign_OBJECTS)
infoalign_LDADD = $(LDADD)
@ISCYGWIN_FALSE@infoalign_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@infoalign_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_infobase_OBJECTS = infobase.$(OBJEXT)
infobase_OBJECTS = $(am_infobase_OBJECTS)
infobase_LDADD = $(LDADD)
@ISCYGWIN_FALSE@infobase_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@infobase_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_inforesidue_OBJECTS = inforesidue.$(OBJEXT)
inforesidue_OBJECTS = $(am_inforesidue_OBJECTS)
inforesidue_LDADD = $(LDADD)
@ISCYGWIN_FALSE@inforesidue_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@inforesidue_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_infoseq_OBJECTS = infoseq.$(OBJEXT)
infoseq_OBJECTS = $(am_infoseq_OBJECTS)
infoseq_LDADD = $(LDADD)
@ISCYGWIN_FALSE@infoseq_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@infoseq_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_intconv_OBJECTS = intconv.$(OBJEXT)
intconv_OBJECTS = $(am_intconv_OBJECTS)
intconv_LDADD = $(LDADD)
@ISCYGWIN_FALSE@intconv_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@intconv_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_isochore_OBJECTS = isochore.$(OBJEXT)
isochore_OBJECTS = $(am_isochore_OBJECTS)
isochore_LDADD = $(LDADD)
@ISCYGWIN_FALSE@isochore_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@isochore_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_jaspextract_OBJECTS = jaspextract.$(OBJEXT)
jaspextract_OBJECTS = $(am_jaspextract_OBJECTS)
jaspextract_LDADD = $(LDADD)
@ISCYGWIN_FALSE@jaspextract_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@jaspextract_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_jaspscan_OBJECTS = jaspscan.$(OBJEXT)
jaspscan_OBJECTS = $(am_jaspscan_OBJECTS)
jaspscan_LDADD = $(LDADD)
@ISCYGWIN_FALSE@jaspscan_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@jaspscan_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_jembossctl_OBJECTS = jembossctl.$(OBJEXT)
jembossctl_OBJECTS = $(am_jembossctl_OBJECTS)
jembossctl_LDADD = $(LDADD)
@ISCYGWIN_FALSE@jembossctl_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@jembossctl_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_lindna_OBJECTS = lindna.$(OBJEXT)
lindna_OBJECTS = $(am_lindna_OBJECTS)
lindna_LDADD = $(LDADD)
@ISCYGWIN_FALSE@lindna_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@lindna_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_listor_OBJECTS = listor.$(OBJEXT)
listor_OBJECTS = $(am_listor_OBJECTS)
listor_LDADD = $(LDADD)
@ISCYGWIN_FALSE@listor_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@listor_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
makenucseq_SOURCES = makenucseq.c
makenucseq_OBJECTS = makenucseq.$(OBJEXT)
makenucseq_LDADD = $(LDADD)
@ISCYGWIN_FALSE@makenucseq_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@makenucseq_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
makeprotseq_SOURCES = makeprotseq.c
makeprotseq_OBJECTS = makeprotseq.$(OBJEXT)
makeprotseq_LDADD = $(LDADD)
@ISCYGWIN_FALSE@makeprotseq_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@makeprotseq_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_marscan_OBJECTS = marscan.$(OBJEXT)
marscan_OBJECTS = $(am_marscan_OBJECTS)
marscan_LDADD = $(LDADD)
@ISCYGWIN_FALSE@marscan_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@marscan_DEPENDENCIES = ../nucleus/libnucleus.la \
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@notseq_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@oddcomp_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@palindrome_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@pasteseq_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@patmatdb_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@patmattest_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@pepwindow_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@prima_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@prosextract_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@pscan_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@psiphi_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@rebaseextract_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@rebaseextract_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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recoder_LDADD = $(LDADD)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@recoder_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@redata_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@remap_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@restover_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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restrict_LDADD = $(LDADD)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@restrict_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@revseq_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@seealso_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@seqinfo_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@seqmatchall_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@seqret_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_seqretall_OBJECTS = seqretall.$(OBJEXT)
seqretall_OBJECTS = $(am_seqretall_OBJECTS)
seqretall_LDADD = $(LDADD)
@ISCYGWIN_FALSE@seqretall_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@seqretall_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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seqretallfeat_OBJECTS = $(am_seqretallfeat_OBJECTS)
seqretallfeat_LDADD = $(LDADD)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@seqretallfeat_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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seqretset_OBJECTS = $(am_seqretset_OBJECTS)
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@ISCYGWIN_FALSE@seqretset_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@seqretset_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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seqretsingle_LDADD = $(LDADD)
@ISCYGWIN_FALSE@seqretsingle_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@seqretsingle_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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seqretsplit_OBJECTS = $(am_seqretsplit_OBJECTS)
seqretsplit_LDADD = $(LDADD)
@ISCYGWIN_FALSE@seqretsplit_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@seqretsplit_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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seqrettype_OBJECTS = $(am_seqrettype_OBJECTS)
seqrettype_LDADD = $(LDADD)
@ISCYGWIN_FALSE@seqrettype_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@seqrettype_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@showalign_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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showdb_LDADD = $(LDADD)
@ISCYGWIN_FALSE@showdb_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@showdb_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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showfeat_OBJECTS = $(am_showfeat_OBJECTS)
showfeat_LDADD = $(LDADD)
@ISCYGWIN_FALSE@showfeat_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@showfeat_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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showorf_OBJECTS = $(am_showorf_OBJECTS)
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@ISCYGWIN_FALSE@showorf_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@showorf_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@shuffleseq_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@stssearch_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@syco_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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tcode_LDADD = $(LDADD)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@tcode_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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testplot_LDADD = $(LDADD)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@testplot_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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textsearch_LDADD = $(LDADD)
@ISCYGWIN_FALSE@textsearch_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@textsearch_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@tfextract_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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tfm_LDADD = $(LDADD)
@ISCYGWIN_FALSE@tfm_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@tfm_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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tfscan_OBJECTS = $(am_tfscan_OBJECTS)
tfscan_LDADD = $(LDADD)
@ISCYGWIN_FALSE@tfscan_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@tfscan_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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tmap_LDADD = $(LDADD)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@tmap_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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tranalign_LDADD = $(LDADD)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@tranalign_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_transeq_OBJECTS = transeq.$(OBJEXT)
transeq_OBJECTS = $(am_transeq_OBJECTS)
transeq_LDADD = $(LDADD)
@ISCYGWIN_FALSE@transeq_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@transeq_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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treetypedisplay_LDADD = $(LDADD)
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@ISCYGWIN_FALSE@	../nucleus/libnucleus.la ../ajax/libajaxg.la \
@ISCYGWIN_FALSE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_FALSE@	$(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@treetypedisplay_DEPENDENCIES =  \
@ISCYGWIN_TRUE@	../nucleus/libnucleus.la ../ajax/libajax.la \
@ISCYGWIN_TRUE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
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trimest_LDADD = $(LDADD)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@trimest_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
am_trimseq_OBJECTS = trimseq.$(OBJEXT)
trimseq_OBJECTS = $(am_trimseq_OBJECTS)
trimseq_LDADD = $(LDADD)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@trimseq_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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trimspace_LDADD = $(LDADD)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@trimspace_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@twofeat_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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union_LDADD = $(LDADD)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@union_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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vectorstrip_LDADD = $(LDADD)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@vectorstrip_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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water_LDADD = $(LDADD)
@ISCYGWIN_FALSE@water_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@water_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@whichdb_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@wobble_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@wordcount_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@wordfinder_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@wordmatch_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@wordmatch_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@wossname_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
@ISCYGWIN_FALSE@	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
@ISCYGWIN_TRUE@wossname_DEPENDENCIES = ../nucleus/libnucleus.la \
@ISCYGWIN_TRUE@	../ajax/libajax.la ../plplot/libeplplot.la \
@ISCYGWIN_TRUE@	$(am__DEPENDENCIES_1)
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@ISCYGWIN_FALSE@	../ajax/libajaxg.la ../ajax/libajax.la \
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embossversion_SOURCES = embossversion.c
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featreport_SOURCES = featreport.c
findkm_SOURCES = findkm.c
freak_SOURCES = freak.c
fuzznuc_SOURCES = fuzznuc.c
fuzzpro_SOURCES = fuzzpro.c
fuzztran_SOURCES = fuzztran.c
garnier_SOURCES = garnier.c
geecee_SOURCES = geecee.c
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iep_SOURCES = iep.c
infoalign_SOURCES = infoalign.c
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nospace_SOURCES = nospace.c
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octanol_SOURCES = octanol.c
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palindrome_SOURCES = palindrome.c
pasteseq_SOURCES = pasteseq.c
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pepwindowall_SOURCES = pepwindowall.c
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plotorf_SOURCES = plotorf.c
polydot_SOURCES = polydot.c
preg_SOURCES = preg.c
prettyplot_SOURCES = prettyplot.c
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profit_SOURCES = profit.c
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rebaseextract_SOURCES = rebaseextract.c
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remap_SOURCES = remap.c
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seealso_SOURCES = seealso.c
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showalign_SOURCES = showalign.c
showdb_SOURCES = showdb.c
showfeat_SOURCES = showfeat.c
showorf_SOURCES = showorf.c
showseq_SOURCES = showseq.c
shuffleseq_SOURCES = shuffleseq.c
sigcleave_SOURCES = sigcleave.c
silent_SOURCES = silent.c
sirna_SOURCES = sirna.c
sixpack_SOURCES = sixpack.c
sizeseq_SOURCES = sizeseq.c
skipredundant_SOURCES = skipredundant.c
skipseq_SOURCES = skipseq.c
splitter_SOURCES = splitter.c
stretcher_SOURCES = stretcher.c
stssearch_SOURCES = stssearch.c
supermatcher_SOURCES = supermatcher.c
syco_SOURCES = syco.c
tcode_SOURCES = tcode.c
textsearch_SOURCES = textsearch.c
tfextract_SOURCES = tfextract.c
tfm_SOURCES = tfm.c
tfscan_SOURCES = tfscan.c
tmap_SOURCES = tmap.c
tranalign_SOURCES = tranalign.c
transeq_SOURCES = transeq.c
trimest_SOURCES = trimest.c
trimseq_SOURCES = trimseq.c
trimspace_SOURCES = trimspace.c
twofeat_SOURCES = twofeat.c
union_SOURCES = union.c
vectorstrip_SOURCES = vectorstrip.c
water_SOURCES = water.c
whichdb_SOURCES = whichdb.c
wobble_SOURCES = wobble.c
wordcount_SOURCES = wordcount.c
wordfinder_SOURCES = wordfinder.c
wordmatch_SOURCES = wordmatch.c
wossname_SOURCES = wossname.c
yank_SOURCES = yank.c
acdlog_SOURCES = acdlog.c
ajtest_SOURCES = ajtest.c
complex_SOURCES = complex.c
corbatest_SOURCES = corbatest.c
entrails_SOURCES = entrails.c
histogramtest_SOURCES = histogramtest.c
intconv_SOURCES = intconv.c
origsplitter_SOURCES = origsplitter.c
origunion_SOURCES = origunion.c
newcoils_SOURCES = newcoils.c
patmattest_SOURCES = patmattest.c
prima_SOURCES = prima.c
primers_SOURCES = primers.c
seqinfo_SOURCES = seqinfo.c
seqretall_SOURCES = seqretall.c
seqretallfeat_SOURCES = seqretallfeat.c
seqretset_SOURCES = seqretset.c
seqretsingle_SOURCES = seqretsingle.c
seqrettype_SOURCES = seqrettype.c
testplot_SOURCES = testplot.c
treetypedisplay_SOURCES = treetypedisplay.c
@ISCYGWIN_FALSE@LDADD = ../nucleus/libnucleus.la ../ajax/libajaxg.la ../ajax/libajax.la ../plplot/libeplplot.la $(XLIB)

# Uncomment to use dual libraries
@ISCYGWIN_TRUE@LDADD = ../nucleus/libnucleus.la ../ajax/libajax.la ../plplot/libeplplot.la $(XLIB)
pkgdata_DATA = emboss.default.template
all: all-recursive

.SUFFIXES:
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isochore$(EXEEXT): $(isochore_OBJECTS) $(isochore_DEPENDENCIES) 
	@rm -f isochore$(EXEEXT)
	$(LINK) $(isochore_OBJECTS) $(isochore_LDADD) $(LIBS)
jaspextract$(EXEEXT): $(jaspextract_OBJECTS) $(jaspextract_DEPENDENCIES) 
	@rm -f jaspextract$(EXEEXT)
	$(LINK) $(jaspextract_OBJECTS) $(jaspextract_LDADD) $(LIBS)
jaspscan$(EXEEXT): $(jaspscan_OBJECTS) $(jaspscan_DEPENDENCIES) 
	@rm -f jaspscan$(EXEEXT)
	$(LINK) $(jaspscan_OBJECTS) $(jaspscan_LDADD) $(LIBS)
jembossctl$(EXEEXT): $(jembossctl_OBJECTS) $(jembossctl_DEPENDENCIES) 
	@rm -f jembossctl$(EXEEXT)
	$(LINK) $(jembossctl_OBJECTS) $(jembossctl_LDADD) $(LIBS)
lindna$(EXEEXT): $(lindna_OBJECTS) $(lindna_DEPENDENCIES) 
	@rm -f lindna$(EXEEXT)
	$(LINK) $(lindna_OBJECTS) $(lindna_LDADD) $(LIBS)
listor$(EXEEXT): $(listor_OBJECTS) $(listor_DEPENDENCIES) 
	@rm -f listor$(EXEEXT)
	$(LINK) $(listor_OBJECTS) $(listor_LDADD) $(LIBS)
makenucseq$(EXEEXT): $(makenucseq_OBJECTS) $(makenucseq_DEPENDENCIES) 
	@rm -f makenucseq$(EXEEXT)
	$(LINK) $(makenucseq_OBJECTS) $(makenucseq_LDADD) $(LIBS)
makeprotseq$(EXEEXT): $(makeprotseq_OBJECTS) $(makeprotseq_DEPENDENCIES) 
	@rm -f makeprotseq$(EXEEXT)
	$(LINK) $(makeprotseq_OBJECTS) $(makeprotseq_LDADD) $(LIBS)
marscan$(EXEEXT): $(marscan_OBJECTS) $(marscan_DEPENDENCIES) 
	@rm -f marscan$(EXEEXT)
	$(LINK) $(marscan_OBJECTS) $(marscan_LDADD) $(LIBS)
maskambignuc$(EXEEXT): $(maskambignuc_OBJECTS) $(maskambignuc_DEPENDENCIES) 
	@rm -f maskambignuc$(EXEEXT)
	$(LINK) $(maskambignuc_OBJECTS) $(maskambignuc_LDADD) $(LIBS)
maskambigprot$(EXEEXT): $(maskambigprot_OBJECTS) $(maskambigprot_DEPENDENCIES) 
	@rm -f maskambigprot$(EXEEXT)
	$(LINK) $(maskambigprot_OBJECTS) $(maskambigprot_LDADD) $(LIBS)
maskfeat$(EXEEXT): $(maskfeat_OBJECTS) $(maskfeat_DEPENDENCIES) 
	@rm -f maskfeat$(EXEEXT)
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maskseq$(EXEEXT): $(maskseq_OBJECTS) $(maskseq_DEPENDENCIES) 
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	$(LINK) $(maskseq_OBJECTS) $(maskseq_LDADD) $(LIBS)
matcher$(EXEEXT): $(matcher_OBJECTS) $(matcher_DEPENDENCIES) 
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megamerger$(EXEEXT): $(megamerger_OBJECTS) $(megamerger_DEPENDENCIES) 
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merger$(EXEEXT): $(merger_OBJECTS) $(merger_DEPENDENCIES) 
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msbar$(EXEEXT): $(msbar_OBJECTS) $(msbar_DEPENDENCIES) 
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mwcontam$(EXEEXT): $(mwcontam_OBJECTS) $(mwcontam_DEPENDENCIES) 
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mwfilter$(EXEEXT): $(mwfilter_OBJECTS) $(mwfilter_DEPENDENCIES) 
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needle$(EXEEXT): $(needle_OBJECTS) $(needle_DEPENDENCIES) 
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newcoils$(EXEEXT): $(newcoils_OBJECTS) $(newcoils_DEPENDENCIES) 
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newcpgreport$(EXEEXT): $(newcpgreport_OBJECTS) $(newcpgreport_DEPENDENCIES) 
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newcpgseek$(EXEEXT): $(newcpgseek_OBJECTS) $(newcpgseek_DEPENDENCIES) 
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newseq$(EXEEXT): $(newseq_OBJECTS) $(newseq_DEPENDENCIES) 
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nohtml$(EXEEXT): $(nohtml_OBJECTS) $(nohtml_DEPENDENCIES) 
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nospace$(EXEEXT): $(nospace_OBJECTS) $(nospace_DEPENDENCIES) 
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notab$(EXEEXT): $(notab_OBJECTS) $(notab_DEPENDENCIES) 
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nthseq$(EXEEXT): $(nthseq_OBJECTS) $(nthseq_DEPENDENCIES) 
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origunion$(EXEEXT): $(origunion_OBJECTS) $(origunion_DEPENDENCIES) 
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pepcoil$(EXEEXT): $(pepcoil_OBJECTS) $(pepcoil_DEPENDENCIES) 
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pepinfo$(EXEEXT): $(pepinfo_OBJECTS) $(pepinfo_DEPENDENCIES) 
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pepnet$(EXEEXT): $(pepnet_OBJECTS) $(pepnet_DEPENDENCIES) 
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pepstats$(EXEEXT): $(pepstats_OBJECTS) $(pepstats_DEPENDENCIES) 
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pepwheel$(EXEEXT): $(pepwheel_OBJECTS) $(pepwheel_DEPENDENCIES) 
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pepwindow$(EXEEXT): $(pepwindow_OBJECTS) $(pepwindow_DEPENDENCIES) 
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pepwindowall$(EXEEXT): $(pepwindowall_OBJECTS) $(pepwindowall_DEPENDENCIES) 
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plotcon$(EXEEXT): $(plotcon_OBJECTS) $(plotcon_DEPENDENCIES) 
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polydot$(EXEEXT): $(polydot_OBJECTS) $(polydot_DEPENDENCIES) 
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preg$(EXEEXT): $(preg_OBJECTS) $(preg_DEPENDENCIES) 
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prettyplot$(EXEEXT): $(prettyplot_OBJECTS) $(prettyplot_DEPENDENCIES) 
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prima$(EXEEXT): $(prima_OBJECTS) $(prima_DEPENDENCIES) 
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primers$(EXEEXT): $(primers_OBJECTS) $(primers_DEPENDENCIES) 
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primersearch$(EXEEXT): $(primersearch_OBJECTS) $(primersearch_DEPENDENCIES) 
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prophecy$(EXEEXT): $(prophecy_OBJECTS) $(prophecy_DEPENDENCIES) 
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redata$(EXEEXT): $(redata_OBJECTS) $(redata_DEPENDENCIES) 
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seealso$(EXEEXT): $(seealso_OBJECTS) $(seealso_DEPENDENCIES) 
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seqretall$(EXEEXT): $(seqretall_OBJECTS) $(seqretall_DEPENDENCIES) 
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	    dot_seen=yes; \
	    local_target="$$target-am"; \
	  else \
	    local_target="$$target"; \
	  fi; \
	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
	  || eval $$failcom; \
	done; \
	if test "$$dot_seen" = "no"; then \
	  $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
	fi; test -z "$$fail"

$(RECURSIVE_CLEAN_TARGETS):
	@failcom='exit 1'; \
	for f in x $$MAKEFLAGS; do \
	  case $$f in \
	    *=* | --[!k]*);; \
	    *k*) failcom='fail=yes';; \
	  esac; \
	done; \
	dot_seen=no; \
	case "$@" in \
	  distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
	  *) list='$(SUBDIRS)' ;; \
	esac; \
	rev=''; for subdir in $$list; do \
	  if test "$$subdir" = "."; then :; else \
	    rev="$$subdir $$rev"; \
	  fi; \
	done; \
	rev="$$rev ."; \
	target=`echo $@ | sed s/-recursive//`; \
	for subdir in $$rev; do \
	  echo "Making $$target in $$subdir"; \
	  if test "$$subdir" = "."; then \
	    local_target="$$target-am"; \
	  else \
	    local_target="$$target"; \
	  fi; \
	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
	  || eval $$failcom; \
	done && test -z "$$fail"
tags-recursive:
	list='$(SUBDIRS)'; for subdir in $$list; do \
	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
	done
ctags-recursive:
	list='$(SUBDIRS)'; for subdir in $$list; do \
	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
	done

ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
	unique=`for i in $$list; do \
	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
	  done | \
	  $(AWK) '{ files[$$0] = 1; nonemtpy = 1; } \
	      END { if (nonempty) { for (i in files) print i; }; }'`; \
	mkid -fID $$unique
tags: TAGS

TAGS: tags-recursive $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
		$(TAGS_FILES) $(LISP)
	tags=; \
	here=`pwd`; \
	if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \
	  include_option=--etags-include; \
	  empty_fix=.; \
	else \
	  include_option=--include; \
	  empty_fix=; \
	fi; \
	list='$(SUBDIRS)'; for subdir in $$list; do \
	  if test "$$subdir" = .; then :; else \
	    test ! -f $$subdir/TAGS || \
	      tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \
	  fi; \
	done; \
	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
	unique=`for i in $$list; do \
	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
	  done | \
	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
	      END { if (nonempty) { for (i in files) print i; }; }'`; \
	if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
	  test -n "$$unique" || unique=$$empty_fix; \
	  $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
	    $$tags $$unique; \
	fi
ctags: CTAGS
CTAGS: ctags-recursive $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
		$(TAGS_FILES) $(LISP)
	tags=; \
	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
	unique=`for i in $$list; do \
	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
	  done | \
	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
	      END { if (nonempty) { for (i in files) print i; }; }'`; \
	test -z "$(CTAGS_ARGS)$$tags$$unique" \
	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
	     $$tags $$unique

GTAGS:
	here=`$(am__cd) $(top_builddir) && pwd` \
	  && cd $(top_srcdir) \
	  && gtags -i $(GTAGS_ARGS) $$here

distclean-tags:
	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags

distdir: $(DISTFILES)
	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
	list='$(DISTFILES)'; \
	  dist_files=`for file in $$list; do echo $$file; done | \
	  sed -e "s|^$$srcdirstrip/||;t" \
	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
	case $$dist_files in \
	  */*) $(MKDIR_P) `echo "$$dist_files" | \
			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
			   sort -u` ;; \
	esac; \
	for file in $$dist_files; do \
	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
	  if test -d $$d/$$file; then \
	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
	    fi; \
	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
	  else \
	    test -f $(distdir)/$$file \
	    || cp -p $$d/$$file $(distdir)/$$file \
	    || exit 1; \
	  fi; \
	done
	list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
	  if test "$$subdir" = .; then :; else \
	    test -d "$(distdir)/$$subdir" \
	    || $(MKDIR_P) "$(distdir)/$$subdir" \
	    || exit 1; \
	    distdir=`$(am__cd) $(distdir) && pwd`; \
	    top_distdir=`$(am__cd) $(top_distdir) && pwd`; \
	    (cd $$subdir && \
	      $(MAKE) $(AM_MAKEFLAGS) \
	        top_distdir="$$top_distdir" \
	        distdir="$$distdir/$$subdir" \
		am__remove_distdir=: \
		am__skip_length_check=: \
	        distdir) \
	      || exit 1; \
	  fi; \
	done
check-am: all-am
	$(MAKE) $(AM_MAKEFLAGS) $(check_PROGRAMS)
check: check-recursive
all-am: Makefile $(PROGRAMS) $(DATA)
installdirs: installdirs-recursive
installdirs-am:
	for dir in "$(DESTDIR)$(bindir)" "$(DESTDIR)$(pkgdatadir)"; do \
	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
	done
install: install-recursive
install-exec: install-exec-recursive
install-data: install-data-recursive
uninstall: uninstall-recursive

install-am: all-am
	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am

installcheck: installcheck-recursive
install-strip:
	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	  `test -z '$(STRIP)' || \
	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
mostlyclean-generic:

clean-generic:

distclean-generic:
	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)

maintainer-clean-generic:
	@echo "This command is intended for maintainers to use"
	@echo "it deletes files that may require special tools to rebuild."
clean: clean-recursive

clean-am: clean-binPROGRAMS clean-checkPROGRAMS clean-generic \
	clean-libtool mostlyclean-am

distclean: distclean-recursive
	-rm -rf ./$(DEPDIR)
	-rm -f Makefile
distclean-am: clean-am distclean-compile distclean-generic \
	distclean-tags

dvi: dvi-recursive

dvi-am:

html: html-recursive

info: info-recursive

info-am:

install-data-am: install-pkgdataDATA

install-dvi: install-dvi-recursive

install-exec-am: install-binPROGRAMS

install-html: install-html-recursive

install-info: install-info-recursive

install-man:

install-pdf: install-pdf-recursive

install-ps: install-ps-recursive

installcheck-am:

maintainer-clean: maintainer-clean-recursive
	-rm -rf ./$(DEPDIR)
	-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-generic

mostlyclean: mostlyclean-recursive

mostlyclean-am: mostlyclean-compile mostlyclean-generic \
	mostlyclean-libtool

pdf: pdf-recursive

pdf-am:

ps: ps-recursive

ps-am:

uninstall-am: uninstall-binPROGRAMS uninstall-pkgdataDATA

.MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) install-am \
	install-strip

.PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
	all all-am check check-am clean clean-binPROGRAMS \
	clean-checkPROGRAMS clean-generic clean-libtool ctags \
	ctags-recursive distclean distclean-compile distclean-generic \
	distclean-libtool distclean-tags distdir dvi dvi-am html \
	html-am info info-am install install-am install-binPROGRAMS \
	install-data install-data-am install-dvi install-dvi-am \
	install-exec install-exec-am install-html install-html-am \
	install-info install-info-am install-man install-pdf \
	install-pdf-am install-pkgdataDATA install-ps install-ps-am \
	install-strip installcheck installcheck-am installdirs \
	installdirs-am maintainer-clean maintainer-clean-generic \
	mostlyclean mostlyclean-compile mostlyclean-generic \
	mostlyclean-libtool pdf pdf-am ps ps-am tags tags-recursive \
	uninstall uninstall-am uninstall-binPROGRAMS \
	uninstall-pkgdataDATA


#if PURIFY
#  LINK = purify $(LIBTOOL) --mode=link $(CC) $(CFLAGS) $(LDFLAGS) -o $@
#else
#
#endif
# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT: