| Program name | Description |
|---|
| aaindexextract |
Extract amino acid property data from AAINDEX
|
| cutgextract |
Extract codon usage tables from from CUTG database
|
| jaspextract |
Extract data from JASPAR
|
| printsextract |
Extract data from PRINTS database for use by pscan
|
| prosextract |
Processes the PROSITE motif database for use by patmatmotifs
|
| rebaseextract |
Process the REBASE database for use by restriction enzyme applications
|
| tfextract |
Process TRANSFAC transcription factor database for use by tfscan
|
| cathparse |
Generates DCF file from raw CATH files
|
| domainnr |
Removes redundant domains from a DCF file
|
| domainseqs |
Adds sequence records to a DCF file
|
| domainsse |
Add secondary structure records to a DCF file
|
| scopparse |
Generate DCF file from raw SCOP files
|
| ssematch |
Search a DCF file for secondary structure matches
|
| allversusall |
Sequence similarity data from all-versus-all comparison
|
| seqnr |
Removes redundancy from DHF files
|
| domainer |
Generates domain CCF files from protein CCF files
|
| hetparse |
Converts heterogen group dictionary to EMBL-like format
|
| pdbparse |
Parses PDB files and writes protein CCF files
|
| pdbplus |
Add accessibility & secondary structure to a CCF file
|
| pdbtosp |
Convert swissprot:PDB codes file to EMBL-like format
|
| sites |
Generate residue-ligand CON files from CCF files
|