| Program name | Description |
|---|
| psiphi |
Calculates phi and psi torsion angles from protein coordinates
|
| domainreso |
Remove low resolution domains from a DCF file
|
| domainalign |
Generate alignments (DAF file) for nodes in a DCF file
|
| domainrep |
Reorder DCF file to identify representative structures
|
| seqalign |
Extend alignments (DAF file) with sequences (DHF file)
|
| seqfraggle |
Removes fragment sequences from DHF files
|
| seqsearch |
Generate PSI-BLAST hits (DHF file) from a DAF file
|
| seqsort |
Remove ambiguous classified sequences from DHF files
|
| seqwords |
Generates DHF files from keyword search of UniProt
|
| libgen |
Generate discriminating elements from alignments
|
| matgen3d |
Generate a 3D-1D scoring matrix from CCF files
|
| rocon |
Generates a hits file from comparing two DHF files
|
| rocplot |
Performs ROC analysis on hits files
|
| siggen |
Generates a sparse protein signature from an alignment
|
| siggenlig |
Generate ligand-binding signatures from a CON file
|
| sigscan |
Generate hits (DHF file) from a signature search
|
| sigscanlig |
Search ligand-signature library & write hits (LHF file)
|
| contacts |
Generate intra-chain CON files from CCF files
|
| interface |
Generate inter-chain CON files from CCF files
|