pepnet

Function

Description

pepnet draws a helical net for an input protein sequence. This is a method of displaying the residues of a protein in a simple 3,4,3,4 repeating pattern that emulates at a simple level the arrangement of residues around an alpha helix. It is therefore easy to see patterns of amphipathicity that you may wish to investigate in more detail by using displays such as pepwheel. You can specify which residues to mark up in squares, diamonds and octagons.

Usage

Command line arguments


Input file format

pepnet reads any protein sequence USA.

Output file format

Data files

None.

Notes

None.

References

None.

Warnings

None.

Diagnostic Error Messages

None.

Exit status

It exits with a status of 0.

Known bugs

None.

Author(s)

History

Target users

Comments