| Program name | Description |
|---|
| getorf |
Finds and extracts open reading frames (ORFs)
|
| marscan |
Finds matrix/scaffold recognition (MRS) signatures in DNA sequences
|
| plotorf |
Plot potential open reading frames in a nucleotide sequence
|
| showorf |
Display a nucleotide sequence and translation in pretty format
|
| sixpack |
Display a DNA sequence with 6-frame translation and ORFs
|
| syco |
Draw synonymous codon usage statictic plot for a nucleotide sequence
|
| tcode |
Identify protein-coding regions using Fickett TESTCODE statistic
|
| wobble |
Plot third base position variability in a nucleotide sequence
|