Program name	Description
edialign	Local multiple alignment of sequences
emma	Multiple sequence alignment (ClustalW wrapper)
infoalign	Display basic information about a multiple sequence alignment
plotcon	Plot conservation of a sequence alignment
prettyplot	Draw a sequence alignment with pretty formatting
showalign	Display a multiple sequence alignment in pretty format
tranalign	Generate an aligment of nucleic coding regions from aligned proteins
mse	Multiple Sequence Editor