aligncopy
Function
Description
aligncopy reads a set of aligned sequences and reports the
alignment using any of the standard EMBOSS alignment formats that can
report on the size of the input alignment. An input of two aligned
sequences will allow any of the pairwise formats to be used. Other
input sizes will reject any pairwise alignment
format. Use aligncopypair to print these alignments one pair at
a time.
Usage
Command line arguments
Input file format
aligncopy reads any normal sequence USAs.
Output file format
Data files
For protein sequences EBLOSUM62 is used for the substitution matrix.
For nucleotide sequence, EDNAFULL is used.
Notes
None.
References
None.
Warnings
None.
Diagnostic Error Messages
None.
Exit status
It always exits with status 0.
Known bugs
None.
Author(s)
History
Target users
Comments