LOCUS       AJ006146                1400 bp    DNA     linear   PLN 14-NOV-2006
DEFINITION  Acorus calamus mitochondrial cytochrome oxidase subunit II.
ACCESSION   AJ006146
VERSION     AJ006146.1  GI:3152294
KEYWORDS    coxII gene; cytochrome oxidase; RNA editing; subunit II.
SOURCE      mitochondrion Acorus calamus
  ORGANISM  Acorus calamus
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliophyta; Liliopsida; Acoraceae; Acorus.
REFERENCE   1
  AUTHORS   Albertazzi,F.J., Kudla,J. and Bock,R.
  TITLE     The cox2 locus of the primitive angiosperm plant Acorus calamus:
            molecular structure, transcript processing and RNA editing
  JOURNAL   Mol. Gen. Genet. 259 (6), 591-600 (1998)
   PUBMED   9819051
REFERENCE   2  (bases 1 to 1400)
  AUTHORS   Albertazzi,F.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-1998) Albertazzi F.J., Institut fuer Biologie
            III, University Freiburg, Schaenzlestr. 1, Freiburg D-79104,
            Germany
FEATURES             Location/Qualifiers
     source          1..1400
                     /organism="Acorus calamus"
                     /organelle="mitochondrion"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:4465"
     gene            94..1318
                     /gene="coxII"
     CDS             join(94..475,939..1318)
                     /gene="coxII"
                     /exception="RNA editing"
                     /codon_start=1
                     /product="cytochrome oxidase subunit II"
                     /protein_id="CAA06892.1"
                     /db_xref="GI:3152295"
                     /db_xref="GOA:O63321"
                     /db_xref="InterPro:IPR001505"
                     /db_xref="InterPro:IPR002429"
                     /db_xref="InterPro:IPR008972"
                     /db_xref="InterPro:IPR011759"
                     /db_xref="UniProtKB/TrEMBL:O63321"
                     /translation="MIVHEWLFLTIAPCDAAEPWQLGFQDAATPMMQGITDLHHDIFF
                     FLILILVFVLWMLVRALWHFDYKKHPIPQRIVHGTTIEILRTILPSIILMFIAIPSFA
                     LLYSMDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYMITEDDLELGQSR
                     LLEVDNRVVLPANTHLRMIVTSADVPHSWAVPSSGVKCHAVPGRSNQTSISVQREGVY
                     YGQCSRFCGTNHASMPIVVEAVSMKDYGSWVQNFE"
     exon            94..475
                     /gene="coxII"
                     /number=1
     misc_feature    346
                     /gene="coxII"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="C to U RNA editing"
     misc_feature    472
                     /gene="coxII"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="C to U RNA editing"
     intron          476..938
                     /gene="coxII"
                     /number=1
     exon            939..1318
                     /gene="coxII"
                     /number=2
     misc_feature    1032
                     /gene="coxII"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="C to U RNA editing"
     misc_feature    1113
                     /gene="coxII"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="C to U RNA editing"
     misc_feature    1137
                     /gene="coxII"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="C to U RNA editing"
     misc_feature    1170
                     /gene="coxII"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="C to U RNA editing"
     misc_feature    1188                      modified by Kei Yura
                     /gene="coxII"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="C to U RNA editing"
     misc_feature    1251
                     /gene="coxII"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="C to U RNA editing"
ORIGIN
        1 gcaccaccgc agttccagca agcttctcat ttgagcaaga acaagtctct ctttttggtg
       61 ggagcagagc agtcaaagaa tgaaccaaac aaaatgattg ttcatgaatg gctattcctc
      121 acaattgctc cttgtgatgc agcggaacca tggcaattag gatttcaaga cgcagcaaca
      181 cctatgatgc aaggaataac agacttacat cacgatatct ttttcttcct cattctgatt
      241 ttggttttcg tattatggat gttggttcgc gctttatggc atttcgacta taaaaagcat
      301 cccattccac aaaggattgt tcatggaact actatcgaga ttcttcggac catattacct
      361 agtatcatcc tcatgtttat agctatacca tcatttgctc tattatactc aatggacgag
      421 gtagtcgtag atccagccat tactatcaaa gcgattggac atcaatggta tcggagtgcg
      481 cctcaacacg agaggtaggt gggttacttg gcttggctga ccgctcatct cccattactg
      541 ttgtcgagag agtaagagaa caatagcaat gccaactctg attttcgccc atggttctat
      601 tccgtcgttg ttcgactcaa ctttgtctcg aatgtatata agcctcgtca atcgtaaggc
      661 tcgacgtgaa cggattagcc tctttccaac tttggaccta aggttaaaga cctttggttg
      721 cgtagcaaag acctaaaaac aatacctttc gtaatggggg atcccctgaa caacgactaa
      781 tatgacgact tcggggacgg aggtgatcat agtgcacagc aggcaaaagc acttgaccga
      841 aagggaccag ctctgtttca tttcttctta gatgtggaaa gcttgttgcg gggaaacgtc
      901 gcaagtcaag tttggtggga ggcaggcgtc tacccaacct tatgagtatt cggactataa
      961 tagttccgac gaacaatcac tcacttttga cagttatatg atcacagaag atgatttaga
     1021 attgggtcaa tcacgtttat tagaagtaga caatagagtc gttttaccag ccaacactca
     1081 tttacgtatg attgtaacat ctgctgatgt acctcatagt tgggctgtac cttcttcagg
     1141 tgtcaaatgt catgctgtac ctggtcgttc aaatcagacc tccatttcgg tacaacgaga
     1201 aggagtttac tatggtcagt gcagtagatt ttgtggaact aatcatgcct ctatgcctat
     1261 cgtcgtggaa gcagtttcca tgaaagatta tggctcttgg gttcaaaact ttgaataaac
     1321 tttgaatttg gcgagcgtca gtagtaatta aataaagaag acagtgaatt aggcaaacgg
     1381 tttcaactta tagccctccc
//