Multiple Sequence Alignment Tools
version 1.1
Three steps for building the alignment between the amino acid sequence derived from PDB ATOM description and amino acid seqeucnes in FASTA format
1. Convert PDB to FASTA format, 2. Make input sequence file in FASTA format, and 3. upload the file to align
  1. Upload the PDB file you want to predict and extract aa sequence from ATOM lines.
    PDB file only:

  2. Make a single input sequence file with the output #1 and homologous sequences at hand.

  3. Upload the FASTA format sequence file and run the alignment tool. The result will sooner (or later) appears on the screen.
    FASTA format amino acid sequence only:
update: 20th, Mar., 2010
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